The FASTML Server - Server for computing Maximum Likelihood
ancestral sequence reconstruction - Credits
FastML Credits
In citing the FASTML server please refer to:
Moshe, A., and Pupko, T. 2019 Ancestral sequence reconstruction: accounting for structural information by averaging over replacement matrices. Bioinformatics. 35(15):2562-2568..
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Ashkenazy H, Penn O, Doron-Faigenboim A, Cohen O, Cannarozzi G, Zomer O, Pupko T. 2012 FastML: a web server for probabilistic reconstruction of ancestral sequences Nucleic Acids Res. 40(Web Server issue):W580-4.
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Pupko T, Pe'er I, Hasegawa M, Graur D, Friedman N. 2002 A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. Bioinformatics 18(8): 1116-1123.
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Pupko T, Pe'er I, Shamir R, Graur D. 2000. A fast algorithm for joint reconstruction of ancestral amino-acid sequences.
Mol. Biol. Evol. 17(6): 890-896.
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Pupko, T. and Pe'er I. 2000. Maximum likelihood reconstruction of ancestral amino-acid sequences.
Currents in Computational Molecular Biology. Ed. Miyano, S., Shamir, R, and Takagi, T. pp. 184-185. Universal Academy Press, Tokyo, Japan.
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